Hi,
I have just installed Modeller 6.0v1 on my P-III, Conectiva Linux (RH-like), under /usr/local/bin/modeller6v1/
My .bashrc reads:
# .bashrc # User specific aliases and functions # Source global definitions if [ -f /etc/bashrc ]; then . /etc/bashrc fi ### begin MODELLER6v1 ######################################################
MODINSTALL6v1=/usr/local/bin/modeller6v1 EXECUTABLE_TYPE6v1=i386-absoft LIBS_LIB6v1=$MODINSTALL6v1/modlib/libs.lib KEY_MODELLER6v1=XXX mod=mod6v1 export MODINSTALL6v1 EXECUTABLE_TYPE6v1 LIBS_LIB6v1 KEY_MODELLER6v1 mod PATH=$PATH:$MODINSTALL6v1/bin ulimit -S -s unlimited
### end MODELLER6v1 ########################################################
Attempts to run Modeller:
1. When I try 'mod model-default'I get 'bash: mod: command not found'
2. When I try '/usr/local/bin/modeller6v1/bin/mod6v1 model-default'I get 'STOP'
3. When I try '/usr/local/bin/modeller6v1/bin/mod6v1_i386-absoft model-default' I get something more interesting:
MODELLER 6v1, 17 Jan 2002
PROTEIN STRUCTURE MODELLING BY SATISFACTION OF SPATIAL RESTRAINTS
Copyright(c) 1989-2002 Andrej Sali All Rights Reserved
Written by A. Sali with help from A. Fiser, R. Sanchez, M.A. Marti-Renom, B. Jerkovic, A. Badretdinov, F. Melo, J.P. Overington & E. Feyfant Rockefeller University, New York, USA Harvard University, Cambridge, USA Imperial Cancer Research Fund, London, UK Birkbeck College, University of London, London, UK
Kind, OS, HostName, Kernel, Processor: 4, Linux home.localdomain 2.2.17-14cl i686 Date and time of compilation : 01/24/2002 16:28:15 Job starting time (YY/MM/DD HH:MM:SS): 2002/02/27 16:50:50.084
fullfn__230E> File not found: model-default Directories: :${MODINSTALL6v1}/bin/ Extensions : .top: Prefixes : nothing, pdb recover____E> ERROR_STATUS >= STOP_ON_ERROR: 1 1
Dynamically allocated memory at finish [B,kB,MB]: 2190959 2139.608 2.089 Starting time : 2002/02/27 16:50:50.084 Closing time : 2002/02/27 16:50:51.154 Total CPU time [seconds] : 1.03 STOP
I trust someone can help me.
Yours thankfully,
Ari M. Siqueira, PhD Associate Professor of Biochemistry ICB - UFMG Brazil