Dear Ben,
thanks for the information. I did it, but another problem started.
I moved the Modeller9v7 folder to Desktop and now when I tried to run the command mod9v7, the following message appears:
'mod9v7' is not recognized as an internal or external command, operable program or batch file.
I also tried to move Python 26 in the same folder. However, it stops to work. In addition, when Python is in Program files folder and I try to run some example from Modeller (for example: salign_multiple.py) using IDLE, I got the following message:
Import Error: no module named modeller
So, what should I do? I'm sorry, but I'm really confused how to use Modeller in the Windows Vista platform.
Thanks so much,
Manoel
________________________________ De: Modeller Caretaker modeller-care@salilab.org Para: Manoel Arcisio-Miranda manoelarcisio@yahoo.com.br Cc: modeller_usage@salilab.org Enviadas: Seg, Outubro 26, 2009 1:24:31 PM Assunto: Re: [modeller_usage] Permission denied message
Manoel Arcisio-Miranda wrote: > I am beginner in modeling of proteins. I downloaded the Modeller 9v7 (Windows package) and I am following the tutorials. I just started the Basic Modeling tutorial, but when I type any command at the command line, for example: mod9v7 build_profile.py, the following message appear: > > Cannot open logfile build_profile.log: Permission denied
See step 6 at http://salilab.org/modeller/9v7/release.html#windows
Windows Vista has stricter security than older versions of Windows; it won't let you write into a directory that you don't own, so it won't let Modeller create log files there (or any other output files, such as models). Make a new directory, put the files there, use the 'cd' command to change into it, and then run 'mod9v7'. Don't run things directly out of the Modeller install directory.
Ben Webb, Modeller Caretaker -- modeller-care@salilab.org http://www.salilab.org/modeller/ Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage
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