On 08/29/2010 02:09 PM, meier@lmb.uni-muenchen.de wrote: > Hi all, > suppose I have the following simple "dummy" py-modeller script: > > from modeller import * > from modeller.automodel import * > log.verbose() > env = environ() > > env.io.atom_files_directory = '<path to pdb>' # containing d1f0la3.pdb > a = automodel(env, > alnfile = '<my_pir_file.pir>', # alignment filename > knowns = 'd1f0la3', # codes of the templates > sequence ='d1f0la3') # code of the target
Align codes (the thing after the >P1;) have to be unique. Change your alignment file and Python script accordingly (e.g. you can call the sequence d1f0la3-1 and the structure d1f01la3-2).
Ben Webb, Modeller Caretaker