Hello: with debian amd64, python 2.6, I am at filling missing residues with script
from modeller import * from modeller.automodel import * # Load the automodel class
log.verbose() env = environ()
# directories for input atom files env.io.atom_files_directory = ['.', '../atom_files']
a = loopmodel(env, alnfile = 'alignment.ali', knowns = 'FlaK', sequence = 'FlaK_fill') a.starting_model= 1 a.ending_model = 1
a.loop.starting_model = 1 a.loop.ending_model = 2 a.loop.md_level = refine.fast
a.make()
and command
# mod9.10 fill_res.py
I had some(overcome) problems of alignment. Now, suddenly:
francesco@gig64:~/tmp$ mod9.10 fill_resid.py Could not find platform independent libraries <prefix> Could not find platform dependent libraries <exec_prefix> Consider setting $PYTHONHOME to <prefix>[:<exec_prefix>] 'import site' failed; use -v for traceback francesco@gig64:~/tmp$
which is curious as I am at Modeller modules, so that Python's version should be immaterial. At any event, I can't install a previous version of Python.
Thanks for advice
francesco pietra