Hi,
This should be a very simple problem on renumbering the residues but I couldn't make it work.
The WRITE_MODEL command did not initiate hence no output file was produced.
I wonder why...?
Thanks in advance for any help!
here is the top file (modified from one of Andras posts in 1998) :
SET OUTPUT_CONTROL = 1 1 1 1 1 READ_MODEL FILE = 'model.pdb' RENAME_SEGMENTS RENUMBER_RESIDUES = 3 WRITE_MODEL FILE = 'renumbered_model.pdb'
(the model.pdb file was generated by Modeller and is continuously numbered. )
here is the log:
TOP_________> 2 2 READ_MODEL FILE = 'model.pdb'
openf5__224_> Open 11 OLD SEQUENTIAL model.pdb
Dynamically allocated memory at amaxbnd [B,kB,MB]: 4574383 4467.171 4.362 openf5__224_> Open 11 OLD SEQUENTIAL model.pdb rdatm___297_> Segments, residues, atoms: 1 157 1150 rdatm___298_> Segment: 1 1 1 1150 TOP_________> 3 3 RENAME_SEGMENTS RENUMBER_RESIDUES = 3
Dynamically allocated memory at finish [B,kB,MB]: 4574383 4467.171 4.362
===== Jonathan LS Esguerra Structural Chemistry Department of Medical Biochemistry Gothenburg University, Sweden
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