The new version of Modeller, 9.16, is now available for download! Please see the download page at http://salilab.org/modeller/ for more information.
If you have a license key for Modeller 8 or 9, there is no need to reregister for Modeller 9.16 - the same license key will work. (It won't do any harm to reregister if you want to, though!)
9.16 is primarily a bugfix release relative to the last public release (9.15). Major user-visible changes include:
# alignment.check_sequence_structure() no longer erroneously warns about the potentially large CA-CA distances between residues in different chains.
# Add Python 3.5 support.
# Bundled version of HDF5 updated to 1.8.14.
See the Modeller manual for a full change log: http://salilab.org/modeller/9.16/manual/node40.html
If you encounter bugs in Modeller 9.16, please see http://salilab.org/modeller/9.16/manual/node10.html for information on how to report them.
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Ben Webb, Modeller Caretaker