* on the number of residues

On Tuesday, July 25, 2023, Joel Subach mjsubach@alumni.ncsu.edu wrote:

> Hi Alphafold Multimer may be able to predict the entire oligomer depending > on the residues, thanks:) > > On Tuesday, July 25, 2023* , g.m.tuveri--- via modeller_usage < > modeller_usage@salilab.org> wrote: > >> Hello, I'm trying to add some missing domains to a big homodimeric >> protein, pdb 8em4. I predicted the missing structures with Alphafold and >> now I want to create an entire model of 8em4 using multiple templates. I am >> using the following directives: >> # Comparative modeling by the AutoModel class >> from modeller import * # Load standard Modeller classes >> from modeller.automodel import * # Load the AutoModel class >> >> log.verbose() # request verbose output >> >> class MyModel(AutoModel): >> def special_restraints(self,aln): >> # Constrain the A and B chains to be identical (but only restrain >> # the C-alpha atoms, to reduce the number of interatomic distances >> # that need to be calculated): >> s1 = Selection(self.chains['A']).only_atom_types('CA') >> s2 = Selection(self.chains['B']).only_atom_types('CA') >> self.restraints.symmetry.append(Symmetry(s1, s2, 1.0)) >> def user_after_single_model(self): >> # Report on symmetry violations greater than 1A after building >> # each model: >> self.restraints.symmetry.report(1.0) >> >> env = Environ() # create a new MODELLER environment to build this model >> in >> >> # directories for input atom files >> env.io.atom_files_directory = ['.'] >> >> a = MyModel(env, >> alnfile = 'ali_lrp2.ali', # alignment filename >> knowns = ("8em4","domain1","domain2","domain3"), # codes >> of the templates >> sequence = 'A0A6P5R9N9') # code of the target >> a.starting_model= 1 # index of the first model >> a.ending_model = 1 # index of the last model >> # (determines how many models to >> calculate) >> a.make() # do the actual comparative modeling >> >> In ali_lrp2.ali I have aligned the entire lrp2 sequence with the known >> 8em4 sequence for the two monomers. Headers are the following: >> >P1;A0A6P5R9N9 >> sequence:A0A6P5R9N9:1:A:9322:B:::-1.00:-1.00 >> >> >P1;8em4 >> structureX:8em4:28:A:4414:B::: 2.83:-1.00 >> >> I don't report the sequences, but for each of the headers I am separating >> the two monomers with a /, for example >> >> >P1;A0A6P5R9N9 >> sequence:A0A6P5R9N9:1:A:9322:B:::-1.00:-1.00 >> AAAAAAAAAAAAAAAAAAAA/ >> BBBBBBBBBBBBBBBBBBBB* >> >> >P1;8em4 >> structureX:8em4:28:A:4414:B::: 2.83:-1.00 >> AAAAAA-----AAA-AAAAA/ >> BBBBBB-----BBB-BBBBB* >> >> Then I add the missing domain template sequence in the following way: >> >P1;domain1 >> structureX:domain1::A::B:::: >> ------AAAAA---------/ >> ------BBBBB---------* >> >> >P1;domain2 >> structureX:domain2::A::B:::: >> --------------A-----/ >> --------------B-----* >> >> I keep obtaining knots, especially in the long domain. I made sure that >> the alignment is correct, but maybe the request of symmetry or the use of >> multiple templates are badly implemented. >> I attach the long alignment file >> >> >P1;A0A6P5R9N9 >> sequence:A0A6P5R9N9:1:A:9322:B:::-1.00:-1.00 >> MERGAAAAAAWMLLLAIAACLAPVSGQECGSGNFRCDNGYCIPASWRCDG >> TRDCLDDTDEIGCPPRSCGSGFFLCPAEGTCIPSSWVCDQDKDCSDGADE >> QQNCPGTTCSSQQLTCSNGQCVPIEYRCDHVSDCPDGSDERNCYYPTCDQ >> LTCANGACYNTSQKCDHKVDCRDSSDEANCTTLCSQKEFQCGSGECILRA >> YVCDHDNDCEDNSDEHNCNYDTCGGHQFTCSNGQCINQNWVCDGDDDCQD >> SGDEDGCESNQRHHTCYPREWACPGSGRCISMDKVCDGVPDCPEGEDENN >> ATSGRYCGTGLCSILNCEYQCHQTPYGGECFCPPGHIINSNDSRTCIDFD >> DCQIWGICDQKCENRQGRHQCLCEEGYILERGQHCKSNDSFSAASIIFSN >> GRDLLVGDLHGRNFRILAESKNRGIVMGVDFHYQKHRVFWTDPMQSKVFS >> TDINGLNTQEILNVSIDAPENLAVDWINNKLYLVETRVNRIDVVNLEGNQ >> RVTLITENLGHPRGIALDPTVGYLFFSDWGSLSGQPKVERAFMDGSNRKD >> LVTTKLGWPAGITLDLVSKRVYWVDSRYDYIETVTYDGIQRKTVARGGSL >> VPHPFGISLFEEHVFFTDWTKMAVMKANKFTDTNPQVYHQSSLTPFGVTV >> YHALRQPNATNPCGNNNGGCAQICVLSHRTDNGGLGYRCKCEFGFELDTD >> EHHCVAVKNFLLFSSQTAVRGIPFTLSTQEDVMVPVTGSPSFFVGIDFDA >> QHSTVFYSDLSKDIIYQQKIDGTGKEVITANRLQNVECLSFDWISRNLYW >> TDGGLKSVTVMKLADKSRRQIISNLNNPRSIVVHPAAGYMFLSDWFRPAK >> IMRAWSDGSHLMPIVNTSLGWPNGLAIDWSASRLYWVDAFFDKIEHSNLD >> GLDRKRLGHVDQMTHPFGLTVFEDNVFLTDWRLGAIIRVRKSDGGDMTVV >> RSGISSIMHVKAYDADLQTGTNYCSQTTHPNGDCSHFCFPVPNFQRVCGC >> PYGMKLQRDQMTCEGDPAREPPTQQCGSFSFPCNNGKCVPSIFRCDGVDD >> CHDNSDEHQCGALNNTCSSSAFTCVHGGQCIPGQWRCDKQNDCLDGSDEQ >> NCPTHSPSSTCPPTSFTCDNHMCIPKEWVCDTDNDCSDGSDEKNCQASGT >> CHPTQFRCPDHRCISPLYVCDGDKDCVDGSDEAGCVLNCTSSQFKCADGS >> SCINSRYRCDGVYDCKDNSDEAGCPTRPPGMCHPDEFQCQGDGTCIPNTW >> ECDGHPDCIQGSDEHNGCVPKTCSPSHFLCDNGNCIYNSWVCDGDNDCRD >> MSDEKDCPTQPFRCPSSQWQCPGYSICVNLSALCDGIFDCPNGTDESPLC >> NQDSCSHFNGGCTHQCMQGPFGATCVCPIGYQLANDTKTCEDVNECDTPG >> FCSQHCVNMRGSFRCACDPEYTLESDGRTCKVTASENLLLAVASRDKIVV >> DNITAHMHNIYSLVQDVSFVVALDFDSVTGRVFWSDLLQGKTWSAFQNGT >> DKRVVHDSGLSLTEMIAVDWIGRNIYWTDYTLETIEVSKIDGSHRTVLIS >> KNVTKPRGLALDPRMGDNVMFWSDWGHHPRIERASMDGTMRTVIVQEKIY >> WPCGLSIDYPNRLIYFMDAYLDYIEFCDYDGQNRKQVIASDLVLHHPHAL >> TLFEDSVFWTDRGTHQVMQANKWHGRNQSVVMYSVHQPLGIIAIHPSRQP >> SSPNPCASATCSHLCLLSAQEPRHYSCACPSGWNLSDDSVNCVRGDQPFL >> MSVRENVIFGISLDPEVKSNDAMVPISGIHHGYDVEFDDSEQFIYWVENP >> GEIHRVKTDGSNRTVFAPLSLLGSSLGLALDWISKNIYYTTPASRSIEVL >> TLRGDTRYGKTLITNDGTPLGVGFPVGIAVDPARGKLYWSDHGTDSGVPA >> KIASANMDGTSLKILFTGNMDHLEVVTLDIQEQKLYWAVTSRGVIERGNV >> DGTERMILVHHLAHPWGLAVHGSYLYYSDEQYEVIERVDKSSGSNKVVFR >> DNIPYLRGLRVYHHRNAADSSNGCSNNPNACQQICLPVPGGMFSCACASG >> FKLSPDGRSCSPYNSFMVVSMLPAVRGFSLELSDHSEAMVPVAGQGRNVL >> HADVDVANGFIYWCDFSSSVRSSNGIRRIKPNGSNFTNIVTYGIGANGIR >> GVAVDWVAGNLYFTNAFVYETLIEVIRINTTYRRVLLKVSVDMPRHIVVD >> PKHRYLFWADYGQKPKIERSFLDCTNRTVLVSEGIVTPRGLAVDHDTGYI >> YWVDDSLDIIARIHRDGGESQVVRYGSRYPTPYGITVFGESIIWVDRNLR >> KVFQASKQPGNTDPPTVIRDNINLLRDVTIFDEHVQPLSPAELNNNPCLQ >> SNGGCSHFCFALPELPTPKCGCAFGTLEDDGKNCATSREDFLIYSLNNSL >> RSLHFDPQDHNLPFQAISVEGTAIALDYDRRNNRIFFTQKLNPIRGQISY >> VNLYSGASSPTILLSNIGVTDGIAFDWINRRIYYSDFSNQTINSMAEDGS >> NRAVIARVSKPRAIVLDPCRGYMYWTDWGTNAKIERATLGGNFRVPIVNT >> SLVWPNGLTLDLETDLLYWADASLQKIERSTLTGSNREVIVSTAFHSFGL >> TVYGQYIYWTDFYTKKIYRANKYDGSDLIAMTTRLPTQPSGISTVVKTQQ >> QQCSNPCDQFNGGCSHICAPGPNGAECQCPHEGSWYLANDNKYCVVDTGA >> RCNQFQFTCLNGRCITQDWKCDNDNDCGDGSDELPTVCAFHTCRSTAFTC >> ANGRCVPYHYRCDFYNDCGDNSDEAGCLFRSCNSTTEFTCSNGRCIPLSY >> VCNGINNCHDNDTSDEKNCPPITCQPDFAKCQTTNICVPRAFLCDGDNDC >> GDGSDENPIYCASHTCRSNEFQCVSPHRCIPSYWFCDGEADCVDSSDEPD >> TCGHSLNSCSANQFHCDNGRCISSSWVCDGDNDCGDMSDEDQRHHCELQN >> CSSTEFTCINSRPPNRRCIPQRWVCDGDADCADALDELQNCTMRACSEGE >> FSCANGRCIRQSFRCDRRNDCGDYSDERGCSYPPCRDDQFTCQNGQCITK >> LYVCDEDNDCGDGSDEQEHLCHTPEPTCPPHQFRCDNGHCIEMGTVCNHV >> DDCSDNSDEKGCGINECQDSSISHCDHNCTDTITSFYCSCLPGYKLMSDK >> RTCVDIDECKESPQLCSQKCENVIGSYICKCAPGYIREPDGKSCRQNSNI >> EPYLIFSNRYYIRNLTIDGTSYSLILQGLGNVVALDFDRVEKRLYWIDAE >> KQIIERMFLNKTNRETIISHRLRRAESLAVDWVSRKLYWLDAILDCLFVS >> DLEGRQRRMLAQHCVDANNTFCFENPRGIVLHPQRGHVYWADWGDKAYIA >> RIGMDGTNKTVIISTKIEWPNAITIDYTNDLLYWADAHLGYIEFSDLEGH >> HRHTVYDGTLPHPFALTIFEDTVFWTDWNTRTVEKGNKYDGSGRVVLVNT >> THKPFDIHVLHPYRQPIMSNPCATNNGGCSHLCLIKAGGRGFTCECPDDF >> QTVQLRDRTLCMPMCSSTQFLCGNNEKCIPIWWKCDGQKDCSDGSDESDL >> CPHRFCRLGQFQCRDGNCTSPQALCNARQDCADGSDEDRVLCEHHRCEAN >> EWQCANKRCIPEYWQCDSVDDCLDNSDEDPSHCASRTCRPGQFRCNNGRC >> IPQSWKCDVDNDCGDYSDEPTHECMTAAYNCDNHTEFSCKTNYRCIPQWA >> VCNGFDDCRDNSDEQGCESVPCHPSGDFRCGNHHCIPLRWKCDGIDDCGD >> NSDEESCVPRECTESEFRCADQQCIPSRWVCDQENDCGDNSDERDCEMKT >> CHPEHFQCTSGHCVPKALACDGRADCLDASDESACPTRFPNGTYCPAAMF >> ECKNHVCIQSFWICDGENDCVDGSDEEIHLCFNVPCESPQRFRCDNSRCI >> YGHQLCNGVDDCGDGSDEKEEHCRKPTHKPCTDTEYKCSNGNCVSQHYVC >> DNVDDCGDLSDETGCNLGENRTCAEKICEQNCTQLSNGGFICSCRPGFKP >> STLDKNSCQDINECEEFGICPQSCRNSKGSYECFCVDGFKSMSTHYGERC >> AADGSPPLLLLPENVRIRKYNISSEKFSEYLEEEEHIQTIDYDWDPEGIG >> LSVVYYTVLAQGSQFGAIKRAYLPDFESGSNNPVREVDLGLKYLMQPDGL >> AVDWVGRHIYWSDAKSQRIEVATLDGRYRKWLITTQLDQPAAIAVNPKLG >> LMFWTDQGKQPKIESAWMNGEHRSVLASANLGWPNGLSIDYLNDDRIYWS >> DSKEDVIESIKYDGTDRRLIINEAMKPFSLDIFEDQLFWVAKEKGEVWRQ >> NKFGKGNKEKLLVVNPWLTQVRIFHQLRYNQSVSNPCKQVCSHLCLLRPG >> GYSCACPQGSDFVTGSTVECDAASELPITMPSPCRCMHGGSCYFDENDLP >> KCKCSSGYSGEYCEIGLSRGIPPGTTMAVLLTFVIVIIVGALVLVGFFHY >> RKTGSLLPSLPKLPSLSSLAKPSENGNGVTFRSGADVNMDIGVSPFGPET >> IIDRSMAMNEHFVMEVGKQPVIFENPMYAAKDSTSKVGLAVQGPSVSSQV >> TVSENVENQNYGRSVDPSEIVPEPKPASPGADETQGTKWNIFKRKPKQTT >> NFENPIYAEMDTEQKEAVAVAPPPSPSLPAKASKRSSTPGYTATEDTFKD >> TANLVKEDSDV/ >> MERGAAAAAAWMLLLAIAACLAPVSGQECGSGNFRCDNGYCIPASWRCDG >> TRDCLDDTDEIGCPPRSCGSGFFLCPAEGTCIPSSWVCDQDKDCSDGADE >> QQNCPGTTCSSQQLTCSNGQCVPIEYRCDHVSDCPDGSDERNCYYPTCDQ >> LTCANGACYNTSQKCDHKVDCRDSSDEANCTTLCSQKEFQCGSGECILRA >> YVCDHDNDCEDNSDEHNCNYDTCGGHQFTCSNGQCINQNWVCDGDDDCQD >> SGDEDGCESNQRHHTCYPREWACPGSGRCISMDKVCDGVPDCPEGEDENN >> ATSGRYCGTGLCSILNCEYQCHQTPYGGECFCPPGHIINSNDSRTCIDFD >> DCQIWGICDQKCENRQGRHQCLCEEGYILERGQHCKSNDSFSAASIIFSN >> GRDLLVGDLHGRNFRILAESKNRGIVMGVDFHYQKHRVFWTDPMQSKVFS >> TDINGLNTQEILNVSIDAPENLAVDWINNKLYLVETRVNRIDVVNLEGNQ >> RVTLITENLGHPRGIALDPTVGYLFFSDWGSLSGQPKVERAFMDGSNRKD >> LVTTKLGWPAGITLDLVSKRVYWVDSRYDYIETVTYDGIQRKTVARGGSL >> VPHPFGISLFEEHVFFTDWTKMAVMKANKFTDTNPQVYHQSSLTPFGVTV >> YHALRQPNATNPCGNNNGGCAQICVLSHRTDNGGLGYRCKCEFGFELDTD >> EHHCVAVKNFLLFSSQTAVRGIPFTLSTQEDVMVPVTGSPSFFVGIDFDA >> QHSTVFYSDLSKDIIYQQKIDGTGKEVITANRLQNVECLSFDWISRNLYW >> TDGGLKSVTVMKLADKSRRQIISNLNNPRSIVVHPAAGYMFLSDWFRPAK >> IMRAWSDGSHLMPIVNTSLGWPNGLAIDWSASRLYWVDAFFDKIEHSNLD >> GLDRKRLGHVDQMTHPFGLTVFEDNVFLTDWRLGAIIRVRKSDGGDMTVV >> RSGISSIMHVKAYDADLQTGTNYCSQTTHPNGDCSHFCFPVPNFQRVCGC >> PYGMKLQRDQMTCEGDPAREPPTQQCGSFSFPCNNGKCVPSIFRCDGVDD >> CHDNSDEHQCGALNNTCSSSAFTCVHGGQCIPGQWRCDKQNDCLDGSDEQ >> NCPTHSPSSTCPPTSFTCDNHMCIPKEWVCDTDNDCSDGSDEKNCQASGT >> CHPTQFRCPDHRCISPLYVCDGDKDCVDGSDEAGCVLNCTSSQFKCADGS >> SCINSRYRCDGVYDCKDNSDEAGCPTRPPGMCHPDEFQCQGDGTCIPNTW >> ECDGHPDCIQGSDEHNGCVPKTCSPSHFLCDNGNCIYNSWVCDGDNDCRD >> MSDEKDCPTQPFRCPSSQWQCPGYSICVNLSALCDGIFDCPNGTDESPLC >> NQDSCSHFNGGCTHQCMQGPFGATCVCPIGYQLANDTKTCEDVNECDTPG >> FCSQHCVNMRGSFRCACDPEYTLESDGRTCKVTASENLLLAVASRDKIVV >> DNITAHMHNIYSLVQDVSFVVALDFDSVTGRVFWSDLLQGKTWSAFQNGT >> DKRVVHDSGLSLTEMIAVDWIGRNIYWTDYTLETIEVSKIDGSHRTVLIS >> KNVTKPRGLALDPRMGDNVMFWSDWGHHPRIERASMDGTMRTVIVQEKIY >> WPCGLSIDYPNRLIYFMDAYLDYIEFCDYDGQNRKQVIASDLVLHHPHAL >> TLFEDSVFWTDRGTHQVMQANKWHGRNQSVVMYSVHQPLGIIAIHPSRQP >> SSPNPCASATCSHLCLLSAQEPRHYSCACPSGWNLSDDSVNCVRGDQPFL >> MSVRENVIFGISLDPEVKSNDAMVPISGIHHGYDVEFDDSEQFIYWVENP >> GEIHRVKTDGSNRTVFAPLSLLGSSLGLALDWISKNIYYTTPASRSIEVL >> TLRGDTRYGKTLITNDGTPLGVGFPVGIAVDPARGKLYWSDHGTDSGVPA >> KIASANMDGTSLKILFTGNMDHLEVVTLDIQEQKLYWAVTSRGVIERGNV >> DGTERMILVHHLAHPWGLAVHGSYLYYSDEQYEVIERVDKSSGSNKVVFR >> DNIPYLRGLRVYHHRNAADSSNGCSNNPNACQQICLPVPGGMFSCACASG >> FKLSPDGRSCSPYNSFMVVSMLPAVRGFSLELSDHSEAMVPVAGQGRNVL >> HADVDVANGFIYWCDFSSSVRSSNGIRRIKPNGSNFTNIVTYGIGANGIR >> GVAVDWVAGNLYFTNAFVYETLIEVIRINTTYRRVLLKVSVDMPRHIVVD >> PKHRYLFWADYGQKPKIERSFLDCTNRTVLVSEGIVTPRGLAVDHDTGYI >> YWVDDSLDIIARIHRDGGESQVVRYGSRYPTPYGITVFGESIIWVDRNLR >> KVFQASKQPGNTDPPTVIRDNINLLRDVTIFDEHVQPLSPAELNNNPCLQ >> SNGGCSHFCFALPELPTPKCGCAFGTLEDDGKNCATSREDFLIYSLNNSL >> RSLHFDPQDHNLPFQAISVEGTAIALDYDRRNNRIFFTQKLNPIRGQISY >> VNLYSGASSPTILLSNIGVTDGIAFDWINRRIYYSDFSNQTINSMAEDGS >> NRAVIARVSKPRAIVLDPCRGYMYWTDWGTNAKIERATLGGNFRVPIVNT >> SLVWPNGLTLDLETDLLYWADASLQKIERSTLTGSNREVIVSTAFHSFGL >> TVYGQYIYWTDFYTKKIYRANKYDGSDLIAMTTRLPTQPSGISTVVKTQQ >> QQCSNPCDQFNGGCSHICAPGPNGAECQCPHEGSWYLANDNKYCVVDTGA >> RCNQFQFTCLNGRCITQDWKCDNDNDCGDGSDELPTVCAFHTCRSTAFTC >> ANGRCVPYHYRCDFYNDCGDNSDEAGCLFRSCNSTTEFTCSNGRCIPLSY >> VCNGINNCHDNDTSDEKNCPPITCQPDFAKCQTTNICVPRAFLCDGDNDC >> GDGSDENPIYCASHTCRSNEFQCVSPHRCIPSYWFCDGEADCVDSSDEPD >> TCGHSLNSCSANQFHCDNGRCISSSWVCDGDNDCGDMSDEDQRHHCELQN >> CSSTEFTCINSRPPNRRCIPQRWVCDGDADCADALDELQNCTMRACSEGE >> FSCANGRCIRQSFRCDRRNDCGDYSDERGCSYPPCRDDQFTCQNGQCITK >> LYVCDEDNDCGDGSDEQEHLCHTPEPTCPPHQFRCDNGHCIEMGTVCNHV >> DDCSDNSDEKGCGINECQDSSISHCDHNCTDTITSFYCSCLPGYKLMSDK >> RTCVDIDECKESPQLCSQKCENVIGSYICKCAPGYIREPDGKSCRQNSNI >> EPYLIFSNRYYIRNLTIDGTSYSLILQGLGNVVALDFDRVEKRLYWIDAE >> KQIIERMFLNKTNRETIISHRLRRAESLAVDWVSRKLYWLDAILDCLFVS >> DLEGRQRRMLAQHCVDANNTFCFENPRGIVLHPQRGHVYWADWGDKAYIA >> RIGMDGTNKTVIISTKIEWPNAITIDYTNDLLYWADAHLGYIEFSDLEGH >> HRHTVYDGTLPHPFALTIFEDTVFWTDWNTRTVEKGNKYDGSGRVVLVNT >> THKPFDIHVLHPYRQPIMSNPCATNNGGCSHLCLIKAGGRGFTCECPDDF >> QTVQLRDRTLCMPMCSSTQFLCGNNEKCIPIWWKCDGQKDCSDGSDESDL >> CPHRFCRLGQFQCRDGNCTSPQALCNARQDCADGSDEDRVLCEHHRCEAN >> EWQCANKRCIPEYWQCDSVDDCLDNSDEDPSHCASRTCRPGQFRCNNGRC >> IPQSWKCDVDNDCGDYSDEPTHECMTAAYNCDNHTEFSCKTNYRCIPQWA >> VCNGFDDCRDNSDEQGCESVPCHPSGDFRCGNHHCIPLRWKCDGIDDCGD >> NSDEESCVPRECTESEFRCADQQCIPSRWVCDQENDCGDNSDERDCEMKT >> CHPEHFQCTSGHCVPKALACDGRADCLDASDESACPTRFPNGTYCPAAMF >> ECKNHVCIQSFWICDGENDCVDGSDEEIHLCFNVPCESPQRFRCDNSRCI >> YGHQLCNGVDDCGDGSDEKEEHCRKPTHKPCTDTEYKCSNGNCVSQHYVC >> DNVDDCGDLSDETGCNLGENRTCAEKICEQNCTQLSNGGFICSCRPGFKP >> STLDKNSCQDINECEEFGICPQSCRNSKGSYECFCVDGFKSMSTHYGERC >> AADGSPPLLLLPENVRIRKYNISSEKFSEYLEEEEHIQTIDYDWDPEGIG >> LSVVYYTVLAQGSQFGAIKRAYLPDFESGSNNPVREVDLGLKYLMQPDGL >> AVDWVGRHIYWSDAKSQRIEVATLDGRYRKWLITTQLDQPAAIAVNPKLG >> LMFWTDQGKQPKIESAWMNGEHRSVLASANLGWPNGLSIDYLNDDRIYWS >> DSKEDVIESIKYDGTDRRLIINEAMKPFSLDIFEDQLFWVAKEKGEVWRQ >> NKFGKGNKEKLLVVNPWLTQVRIFHQLRYNQSVSNPCKQVCSHLCLLRPG >> GYSCACPQGSDFVTGSTVECDAASELPITMPSPCRCMHGGSCYFDENDLP >> KCKCSSGYSGEYCEIGLSRGIPPGTTMAVLLTFVIVIIVGALVLVGFFHY >> RKTGSLLPSLPKLPSLSSLAKPSENGNGVTFRSGADVNMDIGVSPFGPET >> IIDRSMAMNEHFVMEVGKQPVIFENPMYAAKDSTSKVGLAVQGPSVSSQV >> TVSENVENQNYGRSVDPSEIVPEPKPASPGADETQGTKWNIFKRKPKQTT >> NFENPIYAEMDTEQKEAVAVAPPPSPSLPAKASKRSSTPGYTATEDTFKD >> TANLVKEDSDV* >> >> >P1;8em4 >> structureX:8em4:28:A:4414:B:MOL_ID 1; MOLECULE LOW-DENSITY LIPOPROTEIN >> RECEPTOR-RELATED PROTEIN CHAIN A, B; SYNONYM LRP-2,GLYCOPROTEIN >> 330,GP330,MEGALIN:MOL_ID 1; ORGANISM_SCIENTIFIC MUS MUSCULUS; >> ORGANISM_COMMON HOUSE MOUSE; ORGANISM_TAXID 10090: 2.83:-1.00 >> ----------------------------CGSGNFRCDNGYCIPASWRCDG >> TRDCLDDTDEIGCPPRSCGSGFFLCPAEGTCIPSSWVCDQDKDCSDGADE >> QQNC---------------------------------------------- >> -------------------------------------------------- >> --------------------DTCGGHQFTCSNGQCINQNWVCDGDDDCQD >> SGDEDGCESNQRHHTCYPREWACPGSGRCISMDKVCDGVPDCPEGEDE-- >> -----YCGTGLCSILNCEYQCHQTPYGGECFCPPGHIINSNDSRTCIDFD >> DCQIWGICDQKCESRQGRHQCLCEEGYILERGQHCKSNDSFSAASIIFSN >> GRDLLVGDLHGRNFRILAESKNRGIVMGVDFHYQKHRVFWTDPMQAKVFS >> TDINGLNTQEILNVSIDAPENLAVDWINNKLYLVETRVNRIDVVNLEGNQ >> RVTLITENLGHPRGIALDPTVGYLFFSDWGSLSGQPKVERAFMDGSNRKD >> LVTTKLGWPAGITLDLVSKRVYWVDSRYDYIETVTYDGIQRKTVARGGSL >> VPHPFGISLFEEHVFFTDWTKMAVMKANKFTDTNPQVYHQSSLTPFGVTV >> YHALRQPNATNPCGNNNGGCAQICVLSHRTDNGGLGYRCKCEFGFELDAD >> EHHCVAVKNFLLFSSQTAVRGIPFTLSTQEDVMVPVTGSPSFFVGIDFDA >> QHSTIFYSDLSKNIIYQQKIDGTGKEVITANRLQNVECLSFDWISRNLYW >> TDGGSKSVTVMKLADKSRRQIISNLNNPRSIVVHPAAGYMFLSDWFRPAK >> IMRAWSDGSHLMPIVNTSLGWPNGLAIDWSTSRLYWVDAFFDKIEHSNLD >> GLDRKRLGHVDQMTHPFGLTVFKDNVFLTDWRLGAIIRVRKSDGGDMTVV >> RRGISSIMHVKAYDADLQTGTNYCSQTTHPNGDCSHFCFPVPNFQRVCGC >> PYGMKLQRDQMTCEGDPAREPPTQQCGSSSFPCNNGKCVPSIFRCDGVDD >> CHDNSDEHQCGALNNTCSSSAFTCVHGGQCIPGQWRCDKQNDCLDGSDEQ >> NCPTRSPSSTCPPTSFTCDNHMCIPKEWVCDTDNDCSDGSDEKNCQASGT >> CHPTQFRCPDHRCISPLYVCDGDKDCVDGSDEAGCVLNCTSSQFKCADGS >> SCINSRYRCDGVYDCKDNSDEAGCPTRPPGMCHPDEFQCQGDGTCIPNTW >> ECDGHPDCIQGSDEHNGCVPKT---------------------------- >> -------------------------------------------------- >> NQDSCLHFNGGCTHRCIQGPFGATCVCPIGYQLANDTKTCEDVNECDIPG >> FCSQHCVNMRGSFRCACDPEYTLESDGRTCKVTASENLLLVVASRDKIIM >> DNITAHTHNIYSLVQDVSFVVALDFDSVTGRVFWSDLLEGKTWSAFQNGT >> DKRVVHDSGLSLTEMIAVDWIGRNIYWTDYTLETIEVSKIDGSHRTVLIS >> KNVTKPRGLALDPRMGDNVMFWSDWGHHPRIERASMDGTMRTVIVQEKIY >> WPCGLSIDYPNRLIYFMDAYLDYIEFCDYDGQNRRQVIASDLVLHHPHAL >> TLFEDSVFWTDRGTHQVMQANKWHGRNQSVVMYSVPQPLGIIAIHPSRQP >> SSPNPCASATCSHLCLLSAQEPRHYSCACPSGWNLSDDSVNCVRGDQPFL >> ISVRENVIFGISLDPEVKSNDAMVPISGIQHGYDVEFDDSEQFIYWVENP >> GEIHRVKTDGSNRTAFAPLSLLGSSLGLALDWVSRNIYYTTPASRSIEVL >> TLRGDTRYGKTLITNDGTPLGVGFPVGIAVDPARGKLYWSDHGTDSGVPA >> KIASANMDGTSLKILFTGNMEHLEVVTLDIQEQKLYWAVTSRGVIERGNV >> DGTERMILVHHLAHPWGLVVHGSFLYYSDEQYEVIERVDKSSGSNKVVFR >> DNIPYLRGLRVYHHRNAADSSNGCSNNPNACQQICLPVPGGMFSCACASG >> FKLSPDGRSCSPYNSFIVVSMLPAVRGFSLELSDHSEAMVPVAGQGRNVL >> HADVDVANGFIYWCDFSSSVRSSNGIRRIKPNGSNFTNIVTYGIGANGIR >> GVAVDWVAGNLYFTNAFVYETLIEVIRINTTYRRVLLKVSVDMPRHIVVD >> PKHRYLFWADYGQKPKIERSFLDCTNRTVLVSEGIVTPRGLAVDHDTGYI >> YWVDDSLDIIARIHRDGGESQVVRYGSRYPTPYGITVFGESIIWVDRNLR >> KVFQASKQPGNTDPPTVIRDSINLLRDVTIFDEHVQPLSPAELNNNPCLQ >> SNGGCSHFCFALPELPTPKCGCAFGTLEDDGKNCATSREDFLIYSLNNSL >> RSLHFDPQDHNLPFQAISVEGMAIALDYDRRNNRIFFTQKLNPIRGQISY >> VNLYSGASSPTILLSNIGVTDGIAFDWINRRIYYSDFSNQTINSMAEDGS >> NRAVIARVSKPRAIVLDPCRGYMYWTDWGTNAKIERATLGGNFRVPIVNT >> SLVWPNGLTLDLETDLLYWADASLQKIERSTLTGSNREVVISTAFHSFGL >> TVYGQYIYWTDFYTKKIYRANKYDGSDLIAMTTRLPTQPSGISTVVKTQQ >> QQCSNPCDQFNGGCSHICAPGPNGAECQCPHEGSWYLANDNKYCVVDTGA >> RCNQFQFTCLNGRCISQDWKCDNDNDCGDGSDELPTVCAFHTCRSTAFTC >> ANGRCVPYHYRCDFYNDCGDNSDEAGCLF--------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> ----------------------------------CRDDQFTCQNGQCITK >> LYVCDEDNDCGDGSDEQEHLCHTPEPTCPPHQFRCDNGHCIEMGTVCNHV >> DDCSDNSDEKGCGINECQDSSISHCDHNCTDTITSFYCSCLPGYKLMSDK >> RTCVDIDECKETPQLCSQKCENVIGSYICKCAPGYIREPDGKSCRQNSNI >> EPYLVFSNRYYIRNLTIDGTSYSLILQGLGNVVALDFDRVEERLYWIDAE >> KQIIERMFLNKTNQETIISHRLRRAESLAVDWVSRKLYWLDAILDCLFVS >> DLEGRQRKMLAQHCVDANNTFCFENPRGIVLHPQRGYVYWADWGDHAYIA >> RIGMDGTNKTVIISTKIEWPNAITIDYTNDLLYWADAHLGYIEFSDLEGH >> HRHTVYDGTLPHPFALTIFEDTVFWTDWNTRTVEKGNKYDGSGRVVLVNT >> THKPFDIHVLHPYRQPIMSNPCATNNGGCSHLCLIKAGGRGFTCECPDDF >> QTVQLRDRTLCMPMCSSTQFLCGNNEKCIPIWWKCDGQKDCSDGSDESDL >> CPHRFCRLGQFQCRDGNCTSPQALCNARQDCADGSDEDRVLCEHHRCEAN >> EWQCANKRCIPEYWQCDSVDDCLDNSDEDPSHCASRTCRPGQFKCNNGRC >> IPQSWKCDVDNDCGDYSDEPIHECMTAAYNCDNHTEFSCKTNYRCIPQWA >> VCNGFDDCRDNSDEQGCESVPCHPSGDFRCGNHHCIPLRWKCDGIDDCGD >> NSDEESCVPRECTESEFRCADQQCIPSRWVCDQENDCGDNSDERDCEMKT >> CHPEHFQCTSGHCVPKALACDGRADCLDASDESACPTRFPNGTYCPAAMF >> ECKNHVCIQSFWICDGENDCVDGSDEEIHLC------------------- >> -------------------------------------------------- >> -------------------------------------------CRPGFKP >> STLDKNSCQDINECEEFGICPQSCRNSKGSYECFCVDGFKSMSTHYGERC >> AADGSPPLLLLPENVRIRKYNISSEKFSEYLEEEEHIQAIDYDWDPEGIG >> LSVVYYTVLSQGSQFGAIKRAYLPDFESGSNNPVREVDLGLKYLMQPDGL >> AVDWVGRHIYWSDAKSQRIEVATLDGRYRKWLITTQLDQPAAIAVNPKLG >> LMFWTDQGKQPKIESAWMNGEHRSVLASANLGWPNGLSIDYLNGDRIYWS >> DSKEDVIESIKYDGTDRRLIINDAMKPFSLDIFEDQLYWVAKEKGEVWRQ >> NKFGKGNKEKLLVVNPWLTQVRIFHQLRYNQSVSNPCKQVCSHLCLLRPG >> GYSCACPQGSDFVTGSTVECDAASELPITMPSPCRCMHGGSCYFDENDLP >> KCKCSSGYSGEYCE------------------------------------ >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -----------/ >> ----------------------------CGSGNFRCDNGYCIPASWRCDG >> TRDCLDDTDEIGCPPRSCGSGFFLCPAEGTCIPSSWVCDQDKDCSDGADE >> QQNC---------------------------------------------- >> -------------------------------------------------- >> --------------------DTCGGHQFTCSNGQCINQNWVCDGDDDCQD >> SGDEDGCESNQRHHTCYPREWACPGSGRCISMDKVCDGVPDCPEGEDE-- >> -----YCGTGLCSILNCEYQCHQTPYGGECFCPPGHIINSNDSRTCIDFD >> DCQIWGICDQKCESRQGRHQCLCEEGYILERGQHCKSNDSFSAASIIFSN >> GRDLLVGDLHGRNFRILAESKNRGIVMGVDFHYQKHRVFWTDPMQAKVFS >> TDINGLNTQEILNVSIDAPENLAVDWINNKLYLVETRVNRIDVVNLEGNQ >> RVTLITENLGHPRGIALDPTVGYLFFSDWGSLSGQPKVERAFMDGSNRKD >> LVTTKLGWPAGITLDLVSKRVYWVDSRYDYIETVTYDGIQRKTVARGGSL >> VPHPFGISLFEEHVFFTDWTKMAVMKANKFTDTNPQVYHQSSLTPFGVTV >> YHALRQPNATNPCGNNNGGCAQICVLSHRTDNGGLGYRCKCEFGFELDAD >> EHHCVAVKNFLLFSSQTAVRGIPFTLSTQEDVMVPVTGSPSFFVGIDFDA >> QHSTIFYSDLSKNIIYQQKIDGTGKEVITANRLQNVECLSFDWISRNLYW >> TDGGSKSVTVMKLADKSRRQIISNLNNPRSIVVHPAAGYMFLSDWFRPAK >> IMRAWSDGSHLMPIVNTSLGWPNGLAIDWSTSRLYWVDAFFDKIEHSNLD >> GLDRKRLGHVDQMTHPFGLTVFKDNVFLTDWRLGAIIRVRKSDGGDMTVV >> RRGISSIMHVKAYDADLQTGTNYCSQTTHPNGDCSHFCFPVPNFQRVCGC >> PYGMKLQRDQMTCEGDPAREPPTQQCGSSSFPCNNGKCVPSIFRCDGVDD >> CHDNSDEHQCGALNNTCSSSAFTCVHGGQCIPGQWRCDKQNDCLDGSDEQ >> NCPTRSPSSTCPPTSFTCDNHMCIPKEWVCDTDNDCSDGSDEKNCQASGT >> CHPTQFRCPDHRCISPLYVCDGDKDCVDGSDEAGCVLNCTSSQFKCADGS >> SCINSRYRCDGVYDCKDNSDEAGCPTRPPGMCHPDEFQCQGDGTCIPNTW >> ECDGHPDCIQGSDEHNGCVPKT---------------------------- >> -------------------------------------------------- >> NQDSCLHFNGGCTHRCIQGPFGATCVCPIGYQLANDTKTCEDVNECDIPG >> FCSQHCVNMRGSFRCACDPEYTLESDGRTCKVTASENLLLVVASRDKIIM >> DNITAHTHNIYSLVQDVSFVVALDFDSVTGRVFWSDLLEGKTWSAFQNGT >> DKRVVHDSGLSLTEMIAVDWIGRNIYWTDYTLETIEVSKIDGSHRTVLIS >> KNVTKPRGLALDPRMGDNVMFWSDWGHHPRIERASMDGTMRTVIVQEKIY >> WPCGLSIDYPNRLIYFMDAYLDYIEFCDYDGQNRRQVIASDLVLHHPHAL >> TLFEDSVFWTDRGTHQVMQANKWHGRNQSVVMYSVPQPLGIIAIHPSRQP >> SSPNPCASATCSHLCLLSAQEPRHYSCACPSGWNLSDDSVNCVRGDQPFL >> ISVRENVIFGISLDPEVKSNDAMVPISGIQHGYDVEFDDSEQFIYWVENP >> GEIHRVKTDGSNRTAFAPLSLLGSSLGLALDWVSRNIYYTTPASRSIEVL >> TLRGDTRYGKTLITNDGTPLGVGFPVGIAVDPARGKLYWSDHGTDSGVPA >> KIASANMDGTSLKILFTGNMEHLEVVTLDIQEQKLYWAVTSRGVIERGNV >> DGTERMILVHHLAHPWGLVVHGSFLYYSDEQYEVIERVDKSSGSNKVVFR >> DNIPYLRGLRVYHHRNAADSSNGCSNNPNACQQICLPVPGGMFSCACASG >> FKLSPDGRSCSPYNSFIVVSMLPAVRGFSLELSDHSEAMVPVAGQGRNVL >> HADVDVANGFIYWCDFSSSVRSSNGIRRIKPNGSNFTNIVTYGIGANGIR >> GVAVDWVAGNLYFTNAFVYETLIEVIRINTTYRRVLLKVSVDMPRHIVVD >> PKHRYLFWADYGQKPKIERSFLDCTNRTVLVSEGIVTPRGLAVDHDTGYI >> YWVDDSLDIIARIHRDGGESQVVRYGSRYPTPYGITVFGESIIWVDRNLR >> KVFQASKQPGNTDPPTVIRDSINLLRDVTIFDEHVQPLSPAELNNNPCLQ >> SNGGCSHFCFALPELPTPKCGCAFGTLEDDGKNCATSREDFLIYSLNNSL >> RSLHFDPQDHNLPFQAISVEGMAIALDYDRRNNRIFFTQKLNPIRGQISY >> VNLYSGASSPTILLSNIGVTDGIAFDWINRRIYYSDFSNQTINSMAEDGS >> NRAVIARVSKPRAIVLDPCRGYMYWTDWGTNAKIERATLGGNFRVPIVNT >> SLVWPNGLTLDLETDLLYWADASLQKIERSTLTGSNREVVISTAFHSFGL >> TVYGQYIYWTDFYTKKIYRANKYDGSDLIAMTTRLPTQPSGISTVVKTQQ >> QQCSNPCDQFNGGCSHICAPGPNGAECQCPHEGSWYLANDNKYCVVDTGA >> RCNQFQFTCLNGRCISQDWKCDNDNDCGDGSDELPTVCAFHTCRSTAFTC >> ANGRCVPYHYRCDFYNDCGDNSDEAGCLF--------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> ----------------------------------CRDDQFTCQNGQCITK >> LYVCDEDNDCGDGSDEQEHLCHTPEPTCPPHQFRCDNGHCIEMGTVCNHV >> DDCSDNSDEKGCGINECQDSSISHCDHNCTDTITSFYCSCLPGYKLMSDK >> RTCVDIDECKETPQLCSQKCENVIGSYICKCAPGYIREPDGKSCRQNSNI >> EPYLVFSNRYYIRNLTIDGTSYSLILQGLGNVVALDFDRVEERLYWIDAE >> KQIIERMFLNKTNQETIISHRLRRAESLAVDWVSRKLYWLDAILDCLFVS >> DLEGRQRKMLAQHCVDANNTFCFENPRGIVLHPQRGYVYWADWGDHAYIA >> RIGMDGTNKTVIISTKIEWPNAITIDYTNDLLYWADAHLGYIEFSDLEGH >> HRHTVYDGTLPHPFALTIFEDTVFWTDWNTRTVEKGNKYDGSGRVVLVNT >> THKPFDIHVLHPYRQPIMSNPCATNNGGCSHLCLIKAGGRGFTCECPDDF >> QTVQLRDRTLCMPMCSSTQFLCGNNEKCIPIWWKCDGQKDCSDGSDESDL >> CPHRFCRLGQFQCRDGNCTSPQALCNARQDCADGSDEDRVLCEHHRCEAN >> EWQCANKRCIPEYWQCDSVDDCLDNSDEDPSHCASRTCRPGQFKCNNGRC >> IPQSWKCDVDNDCGDYSDEPIHECMTAAYNCDNHTEFSCKTNYRCIPQWA >> VCNGFDDCRDNSDEQGCESVPCHPSGDFRCGNHHCIPLRWKCDGIDDCGD >> NSDEESCVPRECTESEFRCADQQCIPSRWVCDQENDCGDNSDERDCEMKT >> CHPEHFQCTSGHCVPKALACDGRADCLDASDESACPTRFPNGTYCPAAMF >> ECKNHVCIQSFWICDGENDCVDGSDEEIHLC------------------- >> -------------------------------------------------- >> -------------------------------------------CRPGFKP >> STLDKNSCQDINECEEFGICPQSCRNSKGSYECFCVDGFKSMSTHYGERC >> AADGSPPLLLLPENVRIRKYNISSEKFSEYLEEEEHIQAIDYDWDPEGIG >> LSVVYYTVLSQGSQFGAIKRAYLPDFESGSNNPVREVDLGLKYLMQPDGL >> AVDWVGRHIYWSDAKSQRIEVATLDGRYRKWLITTQLDQPAAIAVNPKLG >> LMFWTDQGKQPKIESAWMNGEHRSVLASANLGWPNGLSIDYLNGDRIYWS >> DSKEDVIESIKYDGTDRRLIINDAMKPFSLDIFEDQLYWVAKEKGEVWRQ >> NKFGKGNKEKLLVVNPWLTQVRIFHQLRYNQSVSNPCKQVCSHLCLLRPG >> GYSCACPQGSDFVTGSTVECDAASELPITMPSPCRCMHGGSCYFDENDLP >> KCKCSSGYSGEYCE------------------------------------ >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -----------* >> >> >P1;cluster4_2c_now_3875-3998 >> structureX:cluster4_2c_now_3875-3998::A::B:::: >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> 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-------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------EEIHLCFNVPCESPQRFRCDNSRCI >> YGHQLCNGVDDCGDGSDEKEEHCRKPTHKPCTDTEYKCSNGNCVSQHYVC >> DNVDDCGDLSDETGCNLGENRTCAEKICEQNCTQLSNGGFICSCRPGFK- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -----------/ >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> 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-------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------EEIHLCFNVPCESPQRFRCDNSRCI >> YGHQLCNGVDDCGDGSDEKEEHCRKPTHKPCTDTEYKCSNGNCVSQHYVC >> DNVDDCGDLSDETGCNLGENRTCAEKICEQNCTQLSNGGFICSCRPGFK- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -----------* >> >> >P1;cluster3_2c_now_2773-3039 >> structureX:cluster3_2c_now_2773-3039::A::B:::: >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -----------------------EAGCLFRSCNSTTEFTCSNGRCIPLSY >> VCNGINNCHDNDTSDEKNCPPITCQPDFAKCQTTNICVPRAFLCDGDNDC >> GDGSDENPIYCASHTCRSNEFQCVSPHRCIPSYWFCDGEADCVDSSDEPD >> TCGHSLNSCSANQFHCDNGRCISSSWVCDGDNDCGDMSDEDQRHHCELQN >> CSSTEFTCINSRPPNRRCIPQRWVCDGDADCADALDELQNCTMRACSEGE >> FSCANGRCIRQSFRCDRRNDCGDYSDERGCSYPPCRDDQF---------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -----------/ >> -------------------------------------------------- >> -------------------------------------------------- >> 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-------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -----------------------EAGCLFRSCNSTTEFTCSNGRCIPLSY >> VCNGINNCHDNDTSDEKNCPPITCQPDFAKCQTTNICVPRAFLCDGDNDC >> GDGSDENPIYCASHTCRSNEFQCVSPHRCIPSYWFCDGEADCVDSSDEPD >> TCGHSLNSCSANQFHCDNGRCISSSWVCDGDNDCGDMSDEDQRHHCELQN >> CSSTEFTCINSRPPNRRCIPQRWVCDGDADCADALDELQNCTMRACSEGE >> FSCANGRCIRQSFRCDRRNDCGDYSDERGCSYPPCRDDQF---------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -----------* >> >> >P1;cluster2_2c_now_1266-1355 >> structureX:cluster2_2c_now_1266-1355::A::B:::: >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> ----------------GCVPKTCSPSHFLCDNGNCIYNSWVCDGDNDCRD >> MSDEKDCPTQPFRCPSSQWQCPGYSICVNLSALCDGIFDCPNGTDESPLC >> NQDSCS-------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> 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-------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -----------/ >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> ----------------GCVPKTCSPSHFLCDNGNCIYNSWVCDGDNDCRD >> MSDEKDCPTQPFRCPSSQWQCPGYSICVNLSALCDGIFDCPNGTDESPLC >> NQDSCS-------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> 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-------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -------------------------------------------------- >> -----------* >> _______________________________________________ >> modeller_usage mailing list >> modeller_usage@salilab.org >> https://salilab.org/mm/postorius/lists/modeller_usage.salilab.org/ >> >