I'm using modeller 9.21 for Mac and python 2.7.16.
I'm trying to run python scripts by using these commands on terminal.However, it gives me permission denied error.How can I solve this permission error?
mkdir modeller
cd modeller/
ls
mod9.21 examples/
Cannot open logfile examples/.log: Permission denied
mod9.21 examples/salign/salign_align2d.py
Cannot open logfile examples/salign/salign_align2d.log: Permission denied
mod9.21 /Library/modeller-9.21/examples/salign/salign_align2d.py
Cannot open logfile /Library/modeller-9.21/examples/salign/salign_align2d.log: Permission denied
mod9.21 /Library/modeller-9.21/examples/salign/salign_align2d.py >AA
Cannot open logfile /Library/modeller-9.21/examples/salign/salign_align2d.log: Permission denied
./run_tests
Entering directory: all-steps
mod9.21 search.py
Cannot open logfile search.log: Permission denied
mod9.21 compare.py
Cannot open logfile compare.log: Permission denied
mod9.21 get-model.py
Cannot open logfile get-model.log: Permission denied
Entering directory: assessment
mod9.21 assess_dope.py
Cannot open logfile assess_dope.log: Permission denied
mod9.21 assess_normalized_dope.py
Cannot open logfile assess_normalized_dope.log: Permission denied
On 4/24/19 10:16 AM, Almira Ovagimyan wrote: > I'm using modeller 9.21 for Mac and python 2.7.16. > > I'm trying to run python scripts by using these commands on > terminal.However, it gives me permission denied error.How can I solve > this permission error?
Make a copy of the directory somewhere where you do have permissions (usually under your home directory):
cp -a /Library/modeller-9.21/examples/ ~/examples/ cd ~/examples/salign python salign_align2d.py
Just plain 'python' works better than 'mod9.21' on most machines these days.
Ben Webb, Modeller Caretaker