23 Apr
2018
23 Apr
'18
6:45 p.m.
On 4/22/18 7:44 AM, Ayesha Fatima wrote:> is this the .ali file to give for alignment.
Yes, an alignment file like that should work fine.
> Which script should I use.
Since it's a chimera most conventional alignment scripts are not going to do the right thing for you, since they will try to make a global alignment of the two proteins, which is precisely not what you want. I would combine them manually, unless you have another structure of a linker region to which both will align.
Ben Webb, Modeller Caretaker
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