30 Mar
2020
30 Mar
'20
12:41 p.m.
On 3/30/20 11:15 AM, Li,Haoxi wrote: > 1. Am I able to use the sequence alignment from external sources, > like Blast?
Of course. Modeller doesn't care where the alignment comes from, as long as it's in the correct format.
> 2. When the model was built, I found many stereo clashes in the > structure. Is this normal? Is there any way that I can fix the stereo > clashes?
Most likely this is due to a poor alignment. But you would need to look at the clashes in a PDB viewer to see what's going on.
Ben Webb, Modeller Caretaker
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