So, none of the other lines are not errors.
I meant to put all the errors, while running other commands, but found it too long. With this one, I checked one log file and it was empty. I will check another when I have access.
Thanks
On Fri, Aug 26, 2016 at 6:03 PM, Modeller Caretaker < modeller-care@salilab.org> wrote:
> On 8/26/16 1:58 PM, Maryam Faridounnia wrote: > >> I'm trying to get the format right for a multiple alignment, I did in >> HHpred server to use as input to modeller. I don't understand the error >> messages. >> > > I only see one error message: > > _modeller.SequenceMismatchError: read_te_291E> Sequence difference >> between alignment and pdb : >> > > I'm not sure how to state the error any more clearly than it is already... > but the sequence in your alignment has to match the sequence in the PDB > file. So you have to change one or the other (usually the alignment) so > that they match. If you look in the Modeller log file it will show you > exactly where the mismatch occurred. Usually it's just a single residue > mutation or a short insertion. > > Ben Webb, Modeller Caretaker > -- > modeller-care@salilab.org https://salilab.org/modeller/ > Modeller mail list: https://salilab.org/mailman/listinfo/modeller_usage >