29 Jun
2014
29 Jun
'14
4:49 p.m.
Hi everyone,
I am working on the tutorial http://salilab.org/modeller/wiki/Missing%20residues
I am trying to run the script 1qg8_getseq.py which has
# Get the sequence of the 1qg8 PDB file, and write to an alignment file code = '1qg8'
e = environ() m = model(e, file=code) aln = alignment(e) aln.append_model(m, align_codes=code) aln.write(file=code+'.seq')
I get the following error.
File "1qg8_getseq.py", line 4, in <module> e = environ() NameError: name 'environ' is not defined
Looks like python is not reading the modeller libraries. Could you please advise how to solve this error?
Thank you
Sajeewa Dewage