Hello,
First have a look at how you build a model from multiple templates: http://salilab.org/modeller/manual/node21.html
Then just make sure that, in your alignment, the templates align with the part of the protein you want to model.
>P1; PDBA structureX:PDBA: 1: A: 10: A:::: AAAAAAAAA--------------------* >P1; PDBB structureX:PDBB: 1: A: 10: A:::: ---------------------BBBBBBBBB* >P1; Model sequence:Model: 1: A: 20: A:::: AAAAAAAAABBBBBBBBB*
I *think* this is the correct approach but honestly I can't be certain because I can't check it now.
Regards,
João [...] Rodrigues @ http://stanford.edu/~joaor/
2009/11/24 leuven leuven@yeah.net
> > Does anybody know how to achieve this? > Thank you very much. > > 在2009-11-22，leuven leuven@yeah.net 写道： > > -----原始邮件----- > *发件人:*leuven leuven@yeah.net > *发送时间:*2009年11月22日 星期日 > *收件人:*modeller_usage@salilab.org > *主题:*[modeller_usage] how to assign different template for different > regions? > > > Dear Sir: > I would like to build models assining different templates for different > regions. For exmple: PDB-A for 1-150aa, PDB-B for 151-220aa and so on. How > to achieve this? Because different template has different homolog with > different regions. > Thank you very much. > > > _______________________________________________ > modeller_usage mailing list > modeller_usage@salilab.org > https://salilab.org/mailman/listinfo/modeller_usage > >