Hello all,
I would like first to say that IMP has been a great help for me and I have
been using
it extensively in my current project. Thank you!
I just pulled the latest IMP from the git and built it after doing :
cmake ../imp-source/ -DCMAKE_BUILD_TYPE=Release
Suddenly when running code using IMP (python bindings) I'm getting tons
of logs (for each creation/destruction of a Model object for example)
I thought I was building in release so why do I get all of those logs? Can
I disable them?
You can see below the output of the cmake command.
I'm using cmake version 2.8.7
Thank you,
Dany
*
*
*Example for some logs :
*
Matched Atom N of residue 525 with [] and 1
end search
begin search:
Matched Atom CA of residue 525 with [] and 1
end search
begin search:
Matched Atom C of residue 525 with [] and 1
end search
begin search:
Matched Atom O of residue 525 with [] and 1
end search
begin search:
Matched Atom CB of residue 525 with [] and 1
end search
begin search:
Matched Atom CG of residue 525 with [] and 1
end search
begin search:
Matched Atom CD of residue 525 with [] and 1
end search
Matched PRO with [4365, 4367, 4368, 4369, 4370, 4371, 4372] and 1
end search
Matched Chain E with [0, 4, 5, 6, 7, 8, 10, 11, 12, 13, 14, ,...] and 1
end search
Matched 1oel_E.pdb: with [0, 4, 5, 6, 7, 8, 10, 11, 12, 13, 14, ,...]
and 1
end search
*
*
*The cmake output :
*
$ cmake ../imp-source/ -DCMAKE_BUILD_TYPE=Release
-- The C compiler identification is GNU
-- The CXX compiler identification is GNU
-- Check for working C compiler: /usr/bin/gcc
-- Check for working C compiler: /usr/bin/gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Running check_common_problems
-- Running setup_cmake
-- Wrong doxygen version at /usr/bin/doxygen. Found 1.7.6.1, but needed
1.8.4
-- Will download doxygen from
http://ftp.stack.nl/pub/users/dimitri/doxygen-1.8.4.linux.bin.tar.gz
-- Running setup_doxygen
-- Python version is 2.7
-- Found PythonLibs: /usr/lib/libpython2.7.so (found suitable exact version
"2.7.3")
-- Running setup
-- Running setup_containers
-- Running setup_all
-- Running setup_module_alias for compatibility
-- Setting up alias for module base as compatibility
-- Running setup_module_alias for kernel
-- Setting up alias for module kernel as
-- Boost version: 1.46.1
-- Found the following Boost libraries:
-- system
-- filesystem
-- thread
-- program_options
-- Performing Test IMP_COMPILER_HAS_AUTO
-- Performing Test IMP_COMPILER_HAS_AUTO - Failed
-- Performing Test IMP_COMPILER_HAS_DEBUG_VECTOR
-- Performing Test IMP_COMPILER_HAS_DEBUG_VECTOR - Success
-- checking for module 'gperftools'
-- package 'gperftools' not found
GPerfTools not found
-- checking for module 'log4cxx'
-- package 'log4cxx' not found
-- Found LOG4CXX
-- Performing Test Log4CXX_found
-- Performing Test Log4CXX_found - Success
-- Found Log4CXX
-- checking for module 'tcmalloc_heapchecker'
-- package 'tcmalloc_heapchecker' not found
TCMalloc_HeapChecker not found
-- checking for module 'tcmalloc_heapprofiler'
-- package 'tcmalloc_heapprofiler' not found
TCMalloc_HeapProfiler not found
-- Running generate paths.cpp
Configuring module base ... yes
-- Running setup_swig_wrappers base
Configuring module benchmark ... yes
-- Running setup_swig_wrappers benchmark
-- Build type: Release
-- USING CXXFLAGS = ' -O3 -DNDEBUG'
-- USING EXEFLAGS = ' '
-- Targetting Unix Makefiles
-- Using /usr/bin/c++ compiler.
-- Updating CMAKE_CXX_FLAGS
Configuring module cgal ... yes
-- Running setup_swig_wrappers cgal
Configuring module kmeans ... yes
-- Running setup_swig_wrappers kmeans
-- Found MPI_C:
/usr/local/lib/openmpi-1.4.1/lib/libmpi.so;/usr/local/lib/openmpi-1.4.1/lib/libopen-rte.so;/usr/local/lib/openmpi-1.4.1/lib/libopen-pal.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libnsl.so;/usr/lib/x86_64-linux-gnu/libutil.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/libdl.so
-- Found MPI_CXX:
/usr/local/lib/openmpi-1.4.1/lib/libmpi_cxx.so;/usr/local/lib/openmpi-1.4.1/lib/libmpi.so;/usr/local/lib/openmpi-1.4.1/lib/libopen-rte.so;/usr/local/lib/openmpi-1.4.1/lib/libopen-pal.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libnsl.so;/usr/lib/x86_64-linux-gnu/libutil.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/libdl.so
-- MPI found
Configuring module mpi ... yes
-- Running setup_swig_wrappers mpi
Configuring module test ... yes
-- Running setup_swig_wrappers test
-- checking for module 'ann'
-- package 'ann' not found
ANN not found
Configuring module algebra ... yes
-- Running setup_swig_wrappers algebra
Configuring module kernel ... yes
-- Running setup_swig_wrappers kernel
Configuring module display ... yes
-- Running setup_swig_wrappers display
-- checking for module 'gsl'
-- found gsl, version 1.15
-- Found GSL
-- Performing Test GSL_found
-- Performing Test GSL_found - Success
-- Found GSL
Configuring module gsl ... yes
-- Running setup_swig_wrappers gsl
Configuring module parallel ... yes
-- Running setup_swig_wrappers parallel
Configuring module score_functor ... yes
-- Running setup_swig_wrappers score_functor
Configuring module statistics ... yes
-- Running setup_swig_wrappers statistics
Configuring module system ... yes
-- Running setup_swig_wrappers system
Configuring module core ... yes
-- Running setup_swig_wrappers core
Configuring module container ... yes
-- Running setup_swig_wrappers container
Configuring module modeller ... yes
-- Running setup_swig_wrappers modeller
Configuring module symmetry ... yes
-- Running setup_swig_wrappers symmetry
Configuring module atom ... yes
-- Running setup_swig_wrappers atom
Configuring module scratch ... yes
-- Running setup_swig_wrappers scratch
Configuring module em ... yes
-- Running setup_swig_wrappers em
Configuring module kinematics ... yes
-- Running setup_swig_wrappers kinematics
Configuring module misc ... yes
-- Running setup_swig_wrappers misc
-- Performing Test RMF_environment
-- Performing Test RMF_environment - Failed
-- checking for module 'RMF'
-- package 'RMF' not found
-- Building internal RMF
-- checking for module 'log4cxx'
-- package 'log4cxx' not found
-- Found Log4CXX
-- Logging enabled
-- Found HDF5: debug;/usr/lib/libhdf5.so;optimized;/usr/lib/libhdf5.so
-- Found SWIG: swig (found version "2.0.4")
-- /usr/include/python2.7
-- benchmark_size
-- benchmark_rmf
-- Found Doxygen: /usr/bin/doxygen
-- Updating paths for RMF <>
Configuring module rmf ... yes
-- Running setup_swig_wrappers rmf
Configuring module rotamer ... yes
-- Running setup_swig_wrappers rotamer
Configuring module saxs ... yes
-- Running setup_swig_wrappers saxs
-- checking for module 'hdf5'
-- package 'hdf5' not found
-- Found HDF5
-- Performing Test HDF5_found
-- Performing Test HDF5_found - Success
-- Found HDF5
Configuring module domino ... yes
-- Running setup_swig_wrappers domino
-- checking for module 'cholmod'
-- package 'cholmod' not found
CHOLMOD not found
-- checking for module 'eigen3'
-- package 'eigen3' not found
Eigen3 not found
Configuring module isd ... Eigen3 not found
Different data/build_info/sorted_modules
-isd
Module IMP.isd disabled
Configuring module restrainer ... yes
-- Running setup_swig_wrappers restrainer
-- checking for module 'fftw3'
-- found fftw3, version 3.3.3
-- Found FFTW3
-- Performing Test FFTW3_found
-- Performing Test FFTW3_found - Success
-- Found FFTW3
-- checking for module 'opencv21'
-- package 'opencv21' not found
OpenCV21 not found
-- checking for module 'opencv22'
-- package 'opencv22' not found
OpenCV22 not found
em2d is disabled
Different data/build_info/sorted_modules
-em2d
Module IMP.em2d disabled
-- checking for module 'exampledependency'
-- package 'exampledependency' not found
ExampleDependency not found
Configuring module example ... yes
-- Running setup_swig_wrappers example
Configuring module multifit ... yes
-- Running setup_swig_wrappers multifit
Configuring module pepdock ... yes
-- Running setup_swig_wrappers pepdock
-- checking for module 'libtau'
-- package 'libtau' not found
libTau not found
Configuring module cnmultifit ... libTau not found
Different data/build_info/sorted_modules
-cnmultifit
Module IMP.cnmultifit disabled
-- Running setup_swig_dependencies
-- Creating thread pool with 16
Configuring application EMageFit ... no
Different data/build_info/applications
-EMageFit
Application EMageFit disabled
Configuring application cnmultifit_tools ... no
Different data/build_info/applications
-cnmultifit_tools
Application cnmultifit_tools disabled
Configuring application em_tools ... yes
Configuring application example_app ... yes
Configuring application foxs ... yes
Configuring application integrative_docking ... yes
Configuring application ligand_score ... yes
Configuring application multifit_tools ... yes
Configuring application pdb_tools ... yes
Configuring application rmf_tools ... yes
Configuring application saxs_merge ... no
Different data/build_info/applications
-saxs_merge
Application saxs_merge disabled
Configuring application saxs_tools ... yes
-- Running setup_doxygen_config
-- Running setup_imppy
-- Configuring done
