Hello all,
I have installed IMP nightly build and I can run all the examples.
I am actually looking for an example that does ab initio protein structure prediction.
The example http://www.salilab.org/~drussel/unstructured/imp_doc/atom_examples.html#str… does generate pdb files but I came to know that, this example does not actually do the structure prediction. It gives just the extended chain structures.
Do we have any examples in which we can feed a sequence and get some models (probably pdb files)?
Otherwise, what examples do we need to refer in order to do that?
Once I do that, I plan to add other spatial restrains one by one and observe the changes in prediction after that.
Sincerely,
Badri Adhikari
CS Graduate Student,
University of Missouri-Columbia,
Columbia, Missouri
BAP54(a)mail.missouri.edu<mailto:BAP54@mail.missouri.edu>
Hello imp users and experts,
I am using edited version of http://www.salilab.org/~drussel/unstructured/imp_doc/atom_examples.html#str… to generate structures from amino-acid sequences. This example uses IMP.atom.CHARMMTopology.
I would like to feed contact information as a restrain to guide the prediction process.
1. What should be the approach? Which classes/functions should be used?
2. Are there any such examples?
Sincerely,
Badri Adhikari
CS Graduate Student,
University of Missouri-Columbia,
Columbia, Missouri
BAP54(a)mail.missouri.edu<mailto:BAP54@mail.missouri.edu>