IMP-users April 2014

imp-users@salilab.org

3 participants
3 discussions

IMP 2.2.0 release
by Ben Webb 10 Apr '14

10 Apr '14

IMP 2.2.0 is now available. It contains a number of new features, notably support for SOAP scoring and a more reliable RMF file format. See https://github.com/salilab/imp/releases/tag/2.2.0 for the full change log. Check it out at http://integrativemodeling.org/ As always, we'll make a a 2.2.1 release in a few weeks if any significant bugs show up in 2.2.0. Ben -- ben(a)salilab.org http://salilab.org/~ben/ "It is a capital mistake to theorize before one has data." - Sir Arthur Conan Doyle

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RMF error while building
by Ibai Irastorza 07 Apr '14

07 Apr '14

Hi imp users, Yesterday I had 2 running imp's in 2 computers: 2.0.1 version and the developer version downloaded from github. I deleted both (imp folder and path lines from bash) to get the 2.1.1 version because I am still using IMP.restrainer and I need rmf module to make a movie. I get this error over and over again in both computers: [ 88%] /home/bioinfo/Programs/imp/swig/IMP_rmf.impl.i:1: Error: Unable to find 'RMF.i' Running swig on restrainer Traceback (most recent call last): File "/home/bioinfo/Programs/imp-2.0.1/tools/build/make_swig_wrapper.py", line 97, in <module> main() File "/home/bioinfo/Programs/imp-2.0.1/tools/build/make_swig_wrapper.py", line 90, in main run_swig(outputdir, options) File "/home/bioinfo/Programs/imp-2.0.1/tools/build/make_swig_wrapper.py", line 47, in run_swig % (ret, " ".join(args))) OSError: subprocess failed with return code 1: swig -castmode -interface _IMP_rmf -DPySwigIterator=IMP_RMF_PySwigIterator -DSwigPyIterator=IMP_RMF_SwigPyIterator -python -c++ -naturalvar -fvirtual -Wextra -I../../include -I../../swig -oh wrap.h-in -o wrap.cpp-in -I/home/bioinfo/Programs/imp/include -I/usr/include /home/bioinfo/Programs/imp/swig/IMP_rmf.i make[2]: *** [src/rmf_swig/wrap.cpp] Error 1 make[1]: *** [modules/rmf/pyext/CMakeFiles/_IMP_rmf.dir/all] Error 2 make[1]: *** Waiting for unfinished jobs.... Linking CXX shared library ../../../lib/libimp_domino.so Scanning dependencies of target _IMP_restrainer [ 88%] Built target imp_domino [ 89%] Building CXX object modules/restrainer/pyext/CMakeFiles/_IMP_restrainer.dir/__/__/__/src/restrainer_swig/wrap.cpp.o Linking CXX shared module ../../../lib/_IMP_restrainer.so [ 89%] Built target _IMP_restrainer ^Cmake[2]: *** [modules/core/pyext/CMakeFiles/_IMP_core.dir/__/__/__/src/core_swig/wrap.cpp.o] Interrupt make[1]: *** [modules/core/pyext/CMakeFiles/_IMP_core.dir/all] Interrupt make[2]: *** [modules/atom/pyext/CMakeFiles/_IMP_atom.dir/__/__/__/src/atom_swig/wrap.cpp.o] Interrupt make[1]: *** [modules/atom/pyext/CMakeFiles/_IMP_atom.dir/all] Interrupt I searched for the RMF.i file it is ok located in rmf/dependency/RMF/swig/RMF.i I tried with all versions (even getting the RMF_source from git to get the module), I tried to turn off the network as Jan suggested here ,I tried the developer version also, installed the doxygen 1.8.5 version also and the same error always. I don't know what I am missing because yesterday I installed the 2.1.1 and the developer version in one of the computers without problems, and today does not work. I would really appreciate your help, thanks a lot Ibai Irastorza Azkarate, PhD Student Centro Andaluz de Biología del Desarrollo CABD Universidad Pablo de Olavide, Carretera de Utrera km1, 41013 Sevilla, Spain http://www.cabd.es/en-research_groups-104-247-microbiology-s-platypus-summa…

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Doxygen error with last version
by Ibai Irastorza 01 Apr '14

01 Apr '14

Hi everyone, I get this error when I run "make -j 8" both with devel version from git and with the 2.1.0 version from the web: /home/platypus/imp_dev/tools/doxygen/bin/doxygen: 1: /home/platypus/imp_dev/tools/doxygen/bin/doxygen: Syntax error: "(" unexpected make[2]: *** [doxygen/base/tags] Error 2 make[1]: *** [modules/base/CMakeFiles/IMP.base-doc.dir/all] Error 2 make[1]: *** Waiting for unfinished jobs... I do not get that error with 2.0.1 version, but I need the RMF module to work well and I read that only works with last version... thanks a lot in advance, Ibai Irastorza Azkarate, PhD Student Centro Andaluz de Biología del Desarrollo CABD Universidad Pablo de Olavide, Carretera de Utrera km1, 41013 Sevilla, Spain http://www.cabd.es/en-research_groups-104-247-microbiology-s-platypus-summa…

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IMP-users April 2014