Apologies for the naive question, I hope this has not been asked already.
I have successfully installed IMP and gone through the multifit tutorial
I am in the process of implementing multifit for initial fitting of our own
EM density with proteomics data. However, I have a question regarding the
proteomics restraint file.
in the example file:
It is unclear to me what each of the fields means in the "proteins" section
and the meaning of the first field in the "residue-xlink" section.
I assume "30" is the maximum distacnce from experimental data?
What potential is used for these restraints?
Many thanks in advance,