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IMP-users January 2023

imp-users@salilab.org

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How to use zip PDBs with IMP-FOXS (such as with the online version of FOXS)
by sammahdi1994＠yahoo.com 19 Jan '23

19 Jan '23

Hello, I am attempting to run FOXS with 200+ PDBs. For this purpose I have downloaded IMP since the online version of FOXS can only use 100PDBs. However, I don't see an option in the tutorial or the help command for uploading a zip containing multiple PDBs. It appears you have to upload the PDBs individually from what I can see. This is what I'm entering: >>>foxs -g -h pdb.zip saxs_data.dat begin IMP::atom::`anonymous-namespace'::read_pdb: WARNING Sorry, unable to read atoms from PDB file. Thanks for the effort. end IMP::atom::`anonymous-namespace'::read_pdb WARNING can't parse input file pdb.zip

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