IMP-users September 2014

imp-users@salilab.org

2 participants
3 discussions

Configuring IMP 2.2.1: HDF5 once found, twice not
by Frank Thommen 03 Sep '14

03 Sep '14

Dear all, I am building IMP by using a HDF5 installation in a non-standard location. When running cmake with the HDF5_* options, HDF5 is found when configuring some modules, but not found when configuring others. I'm configuring IMP with: $ cmake ../imp-2.2.1 \ -DCMAKE_INSTALL_PREFIX=/my/imp/prefix \ -DBOOST_ROOT=/my/boost/root \ -DHDF5_LIBRARIES=/my/hdf5/root/lib \ -DHDF5_INCLUDE_DIRS=/my/hdf5/root/include And I get: Configuring module parallel ... yes -- Running setup_swig_wrappers parallel -- Running IMP.parallel making all header -- Updating /my/imp/prefix/SRC/build/include/IMP/parallel.h HDF5 not found and Configuring module saxs ... yes -- Running setup_swig_wrappers saxs -- Running IMP.saxs making all header -- Updating /my/imp/prefix/SRC/build/include/IMP/saxs.h HDF5 not found *but* I also get: Configuring module misc ... yes -- [...] -- Found HDF5: /my/hdf5/root/lib -- [...] I can overcome the problem by using the $CMAKE_INCLUDE_PATH and $CMAKE_LIBRARY_PATH environment variables instead. In this case HDF5 is found for all modules. Still, I think this behaviour is quite confusing (Problem already existed with IMP 2.2.0) Cheers Frank

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Wrong CMake warning when building IMP 2.2.1
by Frank Thommen 03 Sep '14

03 Sep '14

Dear all, I am building IMP by using a Boost installation in a non-standard location. When running cmake with "-DBOOST_ROOT=/my/boost/root", the configuration ends successfully but at the end a warning is issued: ---------------- CMake Warning: The variable, 'BOOST_ROOT', specified manually, was not used during the generation. ---------------- However I don't think this warning is true, because if I run cmake w/o "-DBOOST_ROOT=/my/boost/root", I run into a configuration error: ---------------- CMake Error at /g/software/linux/pack/cmake-2.8.4/share/cmake-2.8/Modules/FindBoost.cmake:1128 (message): Unable to find the requested Boost libraries. Boost version: 1.33.1 Boost include path: /usr/include Detected version of Boost is too old. Requested version was 1.38 (or newer). The following Boost libraries could not be found: boost_system boost_filesystem boost_thread boost_program_options No Boost libraries were found. You may need to set BOOST_LIBRARYDIR to the directory containing Boost libraries or BOOST_ROOT to the location of Boost. etc. etc. ---------------- So in fact the variable BOOST_ROOT *is* used and the warning is wrong (or at least misleading). This warning didn't appear when configuring IMP 2.2.0 Cheers Frank

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doxygen version problem ("too new") when building IMP 2.2.1
by Frank Thommen 03 Sep '14

03 Sep '14

Dear all, building IMP 2.2.1 for Python 2.7 (on CentOS 5.10) I'm running into the following situation: $ setenv PATH /where/our/doxygen/lives/bin:${PATH} $ cmake ../imp-2.2.1 -DCMAKE_INSTALL_PREFIX=/my/install/prefix \ -DBOOST_ROOT=/my/boost/root [...] -- Wrong doxygen version at /where/our/doxygen/lives/bin/doxygen. Found 1.8.8, but needed 1.8.6 [...] -- Documentation disabled as doxygen not found [...] $ Seems strange to me, that doxygen 1.8.6 should work but a newer version not. How can I solve this problem *and* use doxygen 1.8.8? Thanks in advance Frank

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IMP-users September 2014