IMP-users August 2017

imp-users@salilab.org

3 participants
3 discussions

SOAP_SCORE
by Pablo Chacon 08 Sep '17

08 Sep '17

Hi all, I am trying to use the soap_score utility to compute the orientational soap protein-protein (pp) score for a set of pp decoys, but I was unable to find a compatible hdf5 file for pp. Is there any way to use the tool for pp? Thanks Pablo -- Structural Bioinformatics Group http://chaconlab.org Biological Chemical Physics Department Rocasolano Physical Chemistry Institute (IQFR) Spanish National Research Council (CSIC) Serrano 119. Madrid. E-28006. Spain Phone: +34-917459574 <917%2045%2095%2074> Fax: +34-915642431 <915%2064%2024%2031>

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IMP 2.8.0 release
by Ben Webb 16 Aug '17

16 Aug '17

IMP 2.8.0 is now available. This is a bugfix and minor update release. Most notably two new applications of IMP are now available, and the Anaconda and Windows pre-built binary packages are now MPI-enabled. This release also includes a number of bug fixes and performance improvements. Note that this will be the last release that includes packages for Ubuntu 12.04 (Precise Pangolin) since it has reached end of life. We will continue to provide packages for newer Ubuntu LTS releases. See https://integrativemodeling.org/2.8.0/doc/manual/changelog.html for the full change log. Check it out at https://integrativemodeling.org/ Ben -- ben(a)salilab.org https://salilab.org/~ben/ "It is a capital mistake to theorize before one has data." - Sir Arthur Conan Doyle

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HDX-MS and DEER support
by Igor Dikiy 02 Aug '17

02 Aug '17

Hello all, I am interested in trying IMP for building a model of a dynamic state based on HDX-MS data I have, as well as ESR DEER distance restraints. Does IMP support either or both of these types of experimental data as restraints? I know there is a recent paper on HDX-MS analysis from the Sali lab, which is supposedly implemented in IMP, but I can't find that module. Thanks a lot, -- Igor Dikiy, PhD Postdoctoral Researcher, Gardner Lab CUNY Advanced Science Research Center 212-413-3228 | http://structbio.asrc.cuny.edu

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IMP-users August 2017