I am studying subunit mobility on a multimeric protein complex, after
sampling with the Monte Carlo method. I would like to analyse the mobility
of each subunit by using normal modes (normal mode analysis) of each
subunit. Is there any function/method in IMP to do this?
I'm using the PMI modeling protocol, working with a cryo-EM
(coarse-grained), and iterating the sampling protocol 10.000 times
(exploring from 10.000 different initial configurations).
Thank you in advance!