Hello all,
I have installed IMP nightly build and I can run all the examples. I am actually looking for an example that does ab initio protein structure prediction. The example http://www.salilab.org/~drussel/unstructured/imp_doc/atom_examples.html#stru... does generate pdb files but I came to know that, this example does not actually do the structure prediction. It gives just the extended chain structures.
Do we have any examples in which we can feed a sequence and get some models (probably pdb files)? Otherwise, what examples do we need to refer in order to do that?
Once I do that, I plan to add other spatial restrains one by one and observe the changes in prediction after that.
Sincerely, Badri Adhikari CS Graduate Student, University of Missouri-Columbia, Columbia, Missouri BAP54@mail.missouri.edumailto:BAP54@mail.missouri.edu
On 07/24/2012 05:01 PM, Adhikari, Badri (MU-Student) wrote: > I am actually looking for an example that does ab initio protein > structure prediction. ... > Otherwise, what examples do we need to refer in order to do that?
My answer from the last time you asked this question is at http://salilab.org/imp/archives/imp-users/msg00208.html
I pointed you to an example which does most of what you need. Additional restraints and sampling protocols are up to you, of course.
Ben
-
Adhikari, Badri (MU-Student) -
Ben Webb