Hi,
I have installed IMP with the minimal requirements that I think that it needs and everything seems to compile without problems. However when I try to import the python modules I get some nasty import errors.
Any help greatly appreciated.
>>> import IMP.core >>> import IMP.atom Traceback (most recent call last): File "<stdin>", line 1, in <module> File "/home/fenwick/opt/lib64/python2.5/site-packages/IMP/atom/__init__.py", line 28, in <module> import _IMP_atom ImportError: /home/fenwick/opt/lib64/python2.5/site-packages/_IMP_atom.so: undefined symbol: _ZN3IMP4atom14CHARMMTopology32CHARMMSegmentTopologyDataWrapperD1Ev >>> import IMP.saxs Traceback (most recent call last): File "<stdin>", line 1, in <module> File "/home/fenwick/opt/lib64/python2.5/site-packages/IMP/saxs/__init__.py", line 163, in <module> import IMP.atom File "/home/fenwick/opt/lib64/python2.5/site-packages/IMP/atom/__init__.py", line 28, in <module> import _IMP_atom ImportError: /home/fenwick/opt/lib64/python2.5/site-packages/_IMP_atom.so: undefined symbol: _ZN3IMP4atom14CHARMMTopology32CHARMMSegmentTopologyDataWrapperD1Ev
Here is the end of teh build process that appears to have worked.
scons: done building targets.
Enabled dependencies: Boost.FileSystem, Boost.ProgramOptions Disabled dependencies: OpenMM, Bullet, CGAL, ANN, OpenCV, NetCDF, modeller, FFTW3, GSL
Enabled modules: em, kernel, domino, misc, statistics, container, display, saxs, system, core, algebra, restrainer, benchmark, atom, example Disabled modules: openmm, cgal, bullet, multifit, gsl, modeller, em2d
Enabled applications: foxs, ligand_score, saxs_tools, em_tools
Enabled systems: Groel, example_system
R. Bryn Fenwick robert.fenwick@irbbarcelona.org Post-doctoral fellow Chemistry and Molecular Pharmacology Programme Institute for Research in Biomedicine (IRB Barcelona) Parc Científic de Barcelona Baldiri Reixac 10, 08028 Barcelona, SPAIN Tel. (+34) 9340 20460