Hello,
I have been running IMP::pmi with a protein complex we are working on in our lab. I have managed to adapt the PMI online example (RNA pol) to work for my example.
A series of files are output in the execution directory: included.None.xl.db, excluded.None.xl.db, missing.None.xl.db
In my "included.None.xl.db file" I only have the following two lines;
{'res2': '155', 'prot1': 'mol3', 'prot2': 'mol5', 'res1': '160'}
{'res2': '155', 'prot1': 'mol3', 'prot2': 'mol5', 'res1': '154'}
I include more than 30 x-link restraints in my set up. When I compare this to the same file as output with the worked RNA pol example, that file has many more entries.
QUESTION: what is the meaning behind this file? Does it mean most of my x-link restraints were thrown out?
Cheers,
Jason