By modifying the config.py file to include a long list of include directories imp fails to build:
Install file: "kernel/include/constants.h" as "build/include/IMP/constants.h" g++ -o build/src/kernel_wrap.os -c -Wno-deprecated -Woverloaded-virtual -fPIC -DIMP_SWIG_WRAPPER -Ibuild/include -I/home/fenwick/opt/include -I/home/fenwick/opt/include/boost -I/home/fenwick/opt/include/CGAL -I/home/fenwick/opt/include/Python2.5 -I/home/fenwick/opt/include/python2.5 build/src/kernel_wrap.cpp build/src/kernel_wrap.cpp: In function 'int SWIG_CanCastAsInteger(double*, double, double)': build/src/kernel_wrap.cpp:3728: error: 'DBL_EPSILON' was not declared in this scope scons: *** [build/src/kernel_wrap.os] Error 1 scons: building terminated because of errors.
On 20 Jan 2011, at 12:18, Robert Fenwick wrote:
> > Hi, > > I have installed IMP with the minimal requirements that I think that it needs and everything seems to compile without problems. However when I try to import the python modules I get some nasty import errors. > > Any help greatly appreciated. > > >>> import IMP.core > >>> import IMP.atom > Traceback (most recent call last): > File "<stdin>", line 1, in <module> > File "/home/fenwick/opt/lib64/python2.5/site-packages/IMP/atom/__init__.py", line 28, in <module> > import _IMP_atom > ImportError: /home/fenwick/opt/lib64/python2.5/site-packages/_IMP_atom.so: undefined symbol: _ZN3IMP4atom14CHARMMTopology32CHARMMSegmentTopologyDataWrapperD1Ev > >>> import IMP.saxs > Traceback (most recent call last): > File "<stdin>", line 1, in <module> > File "/home/fenwick/opt/lib64/python2.5/site-packages/IMP/saxs/__init__.py", line 163, in <module> > import IMP.atom > File "/home/fenwick/opt/lib64/python2.5/site-packages/IMP/atom/__init__.py", line 28, in <module> > import _IMP_atom > ImportError: /home/fenwick/opt/lib64/python2.5/site-packages/_IMP_atom.so: undefined symbol: _ZN3IMP4atom14CHARMMTopology32CHARMMSegmentTopologyDataWrapperD1Ev > > > Here is the end of teh build process that appears to have worked. > > scons: done building targets. > > > Enabled dependencies: Boost.FileSystem, Boost.ProgramOptions > Disabled dependencies: OpenMM, Bullet, CGAL, ANN, OpenCV, NetCDF, modeller, FFTW3, GSL > > Enabled modules: em, kernel, domino, misc, statistics, container, display, saxs, system, core, algebra, restrainer, benchmark, atom, example > Disabled modules: openmm, cgal, bullet, multifit, gsl, modeller, em2d > > Enabled applications: foxs, ligand_score, saxs_tools, em_tools > > Enabled systems: Groel, example_system > > > R. Bryn Fenwick > robert.fenwick@irbbarcelona.org > Post-doctoral fellow > Chemistry and Molecular Pharmacology Programme > Institute for Research in Biomedicine (IRB Barcelona) > Parc Científic de Barcelona > Baldiri Reixac 10, 08028 Barcelona, SPAIN > Tel. (+34) 9340 20460 > > >
R. Bryn Fenwick robert.fenwick@irbbarcelona.org Post-doctoral fellow Chemistry and Molecular Pharmacology Programme Institute for Research in Biomedicine (IRB Barcelona) Parc Científic de Barcelona Baldiri Reixac 10, 08028 Barcelona, SPAIN Tel. (+34) 9340 20460