Hi,
I am getting an error when running multiple integrative modelling processes with pmi, in some cases this error came out:
[...] ------ simulated_annealing False ------ simulated_annealing_maximum_temperature 5.0 ------ simulated_annealing_maximum_temperature_nframes 20 ------ simulated_annealing_minimum_temperature 1.0 ------ simulated_annealing_minimum_temperature_nframes 100 ------ stat_file_name_suffix stat ------ write_initial_rmf True --- frame 0 score 850716.6597786957 --- writing coordinates
*WARNING No frames were saved to file "RestraintSaveLink1" even though objects were added.WARNING No frames were saved to file "HierarchySaveLink1" even though objects were added.Traceback (most recent call last): *
*File "modelling3_1.py", line 210, in <module> mc1.execute_macro() File "/aplic/noarch/software/imp/2.13.0-Python-3.7.4-GCCcore-8.3.0/lib64/python3.7/site-packages/IMP/pmi/macros.py", line 524, in execute_macro output.write_pdb_best_scoring(score) File "/aplic/noarch/software/imp/2.13.0-Python-3.7.4-GCCcore-8.3.0/lib64/python3.7/site-packages/IMP/pmi/output.py", line 500, in write_pdb_best_scoring exec(fh.read()) File "<string>", line 2 534.8805170496773]*
In some other cases, all frames are correctly written to RMF but not the pdb_best_scoring models. I wonder if it is a simple lack of RAM memory, or lack of disk memory to write PDBs, or may be a combination of both things.
Thanks in advance,
Altair