Hello all,
I have installed IMP nightly build and I can run all the examples. I am actually looking for an example that does ab initio protein structure prediction. The example http://www.salilab.org/~drussel/unstructured/imp_doc/atom_examples.html#stru... does generate pdb files but I came to know that, this example does not actually do the structure prediction. It gives just the extended chain structures.
Do we have any examples in which we can feed a sequence and get some models (probably pdb files)? Otherwise, what examples do we need to refer in order to do that?
Once I do that, I plan to add other spatial restrains one by one and observe the changes in prediction after that.
Sincerely, Badri Adhikari CS Graduate Student, University of Missouri-Columbia, Columbia, Missouri BAP54@mail.missouri.edumailto:BAP54@mail.missouri.edu